STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bamDPutative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (246 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.966
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.835
DvMF_0402
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dde:Dde_2067 thioredoxin; Belongs to the thioredoxin family.
  
  
 0.823
DvMF_0401
Thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2066 thioredoxin reductase (NADPH).
       0.805
DvMF_2360
TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: WD40 domain protein beta Propeller; KEGG: lip:LI0692 periplasmic component of the Tol biopolymer transport system.
 
   
 0.774
DvMF_2718
KEGG: lip:LI0923 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
 
  
 0.672
DvMF_2364
TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3629 TolQ protein.
 
   
 0.666
cpoB
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
   
 0.640
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
  
   
 0.636
DvMF_2363
TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_3630 biopolymer ExbD/TolR family transporter.
 
  
 0.619
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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