STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfSigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (181 aa)    
Predicted Functional Partners:
DvMF_0425
Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dde:Dde_1773 putative PTS IIA-like nitrogen-regulatory protein PtsN.
  
  
 0.936
rpsU
PFAM: ribosomal protein S21; KEGG: dde:Dde_2056 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.909
rpmC
PFAM: ribosomal protein L29; KEGG: dde:Dde_2249 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.908
rpsI
PFAM: ribosomal protein S9; KEGG: dde:Dde_2608 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.900
rpmH
PFAM: ribosomal protein L34; KEGG: pca:Pcar_3146 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.897
rpmA
PFAM: ribosomal protein L27; KEGG: dde:Dde_2691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.897
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
   0.895
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.894
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.893
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.891
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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