Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_0429PFAM: OstA family protein; KEGG: dde:Dde_1769 hypothetical protein. (224 aa)    
Predicted Functional Partners:
DvMF_0430
PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein.
 
 
 0.980
DvMF_0428
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1770 ATPase.
  
  
 0.979
DvMF_0431
TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: dde:Dde_1767 phosphatase KdsC.
  
  
 0.882
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
 
 0.847
kdsA
TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: dde:Dde_1766 2-dehydro-3-deoxyphosphooctonate aldolase.
  
  
 0.830
DvMF_2285
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0355 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.719
DvMF_0427
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.681
DvMF_0549
KEGG: dde:Dde_1811 hypothetical protein.
  
     0.675
DvMF_2256
KEGG: dde:Dde_0346 MucR family transcriptional regulator.
  
     0.669
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.666
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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