STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0436KEGG: dde:Dde_1759 hypothetical protein. (145 aa)    
Predicted Functional Partners:
DvMF_0972
KEGG: dde:Dde_2610 hypothetical protein.
  
     0.713
DvMF_0295
KEGG: dde:Dde_2026 hypothetical protein.
  
     0.654
DvMF_2327
TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase.
  
     0.627
DvMF_0335
KEGG: dde:Dde_2003 hypothetical protein.
  
     0.622
DvMF_2642
KEGG: dde:Dde_3102 hypothetical protein.
  
     0.561
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
  
     0.538
DvMF_1767
KEGG: dde:Dde_0319 hypothetical protein.
  
     0.528
DvMF_1193
PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0791 hypothetical protein.
  
     0.502
DvMF_0857
PFAM: Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_2303 hypothetical protein.
  
     0.500
DvMF_1801
TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: dde:Dde_3224 phage shock protein C, PspC.
  
     0.500
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.