Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
DvMF_0445PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2085 iron-sulfur cluster-binding protein. (168 aa)    
Predicted Functional Partners:
DvMF_1860
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
 0.904
DvMF_0446
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2086 putative glutamate synthase subunit beta.
 
 
 
 0.869
DvMF_1693
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0657 iron-sulfur cluster-binding protein.
 
  
  0.847
DvMF_1520
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: mbn:Mboo_0026 NADH ubiquinone oxidoreductase, 20 kDa subunit; Belongs to the complex I 20 kDa subunit family.
  
 0.841
DvMF_3192
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rru:Rru_A1422 NADH ubiquinone oxidoreductase, 20 kDa subunit.
  
 0.841
DvMF_2688
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2934 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative.
 
  
  0.816
DvMF_1519
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: tte:TTE0124 NADH:ubiquinone oxidoreductase subunit 1 (chain H).
  
 0.813
DvMF_3193
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: chy:CHY_1831 carbon monoxide-induced hydrogenase, CooK subunit.
  
 0.813
DvMF_1523
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tte:TTE0128 formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).
  
 0.779
DvMF_1598
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ote:Oter_0748 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
 0.779
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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