STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0472KEGG: dde:Dde_2111 hypothetical protein. (322 aa)    
Predicted Functional Partners:
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.805
DvMF_2836
KEGG: dde:Dde_1022 hypothetical protein.
  
     0.772
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.756
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
  
     0.751
DvMF_2846
KEGG: dde:Dde_1010 hypothetical protein.
  
     0.749
DvMF_2563
PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein.
  
     0.747
DvMF_2025
KEGG: dde:Dde_0121 hypothetical protein.
  
     0.737
DvMF_2558
KEGG: dde:Dde_1011 hypothetical protein.
  
     0.736
DvMF_2052
KEGG: lip:LI0583 hypothetical protein.
  
     0.724
DvMF_2834
KEGG: dde:Dde_1143 hypothetical protein.
  
     0.711
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.