STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0519KEGG: vei:Veis_0768 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein. (354 aa)    
Predicted Functional Partners:
DvMF_0521
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1108 binding-protein-dependent transport systems inner membrane component.
 
 
 0.995
DvMF_0518
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mja:MJ0412 nitrate transporter protein (NrtC) homolog (CmpC).
 
 
 0.993
DvMF_0522
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mtp:Mthe_0218 ABC transporter related.
 
 
 0.990
DvMF_0520
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpt:Rpal_4641 binding-protein-dependent transport systems inner membrane component.
 
  
 0.958
DvMF_0802
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0164 ABC transporter related.
 
  
 0.735
DvMF_0156
PFAM: NADPH-dependent FMN reductase; KEGG: pfl:PFL_3289 FMN reductase, NADPH-dependent.
  
  
 0.523
DvMF_2723
PFAM: Radical SAM domain protein; KEGG: pzu:PHZ_c2419 hypothetical protein.
  
     0.505
DvMF_1416
KEGG: eba:ebA616 hypothetical protein.
  
     0.493
DvMF_0159
KEGG: dde:Dde_2018 HesB-like domain-containing protein.
  
     0.479
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.