Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0520PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpt:Rpal_4641 binding-protein-dependent transport systems inner membrane component. (265 aa)    
Predicted Functional Partners:
DvMF_0519
KEGG: vei:Veis_0768 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein.
 
 0.986
DvMF_0522
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mtp:Mthe_0218 ABC transporter related.
 
 0.983
DvMF_0518
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mja:MJ0412 nitrate transporter protein (NrtC) homolog (CmpC).
 
 0.980
DvMF_0802
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0164 ABC transporter related.
 
 0.950
DvMF_0167
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gbm:Gbem_1735 twin-arginine translocation pathway signal; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.901
DvMF_0521
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1108 binding-protein-dependent transport systems inner membrane component.
 
    
0.833
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
    
  0.678
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
 
  
 0.660
DvMF_0428
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1770 ATPase.
     
 0.583
DvMF_1044
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter, permease protein.
  
 
  0.559
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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