Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0528PFAM: protein of unknown function DUF111; KEGG: cbe:Cbei_0559 hypothetical protein; Belongs to the LarC family. (499 aa)    
Predicted Functional Partners:
DvMF_0527
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: wsu:WS0137 NCAIR mutase (PurE)-related protein.
 
  
 0.973
DvMF_1465
KEGG: dde:Dde_3008 hypothetical protein.
  
 0.939
DvMF_1997
KEGG: mta:Moth_1926 hypothetical protein.
 
  
 0.852
DvMF_0529
PFAM: aldo/keto reductase; KEGG: mbn:Mboo_0951 aldo/keto reductase.
 
    0.676
DvMF_0593
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4835 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
    0.648
DvMF_1870
PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein.
 
     0.612
DvMF_3139
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dde:Dde_1190 cobalt transport protein CbiM.
  
    0.581
DvMF_2463
KEGG: dde:Dde_0554 hypothetical protein.
 
     0.463
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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