Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0539PFAM: cytochrome c class I; KEGG: dde:Dde_1821 cytochrome c-553. (108 aa)    
Predicted Functional Partners:
DvMF_2531
KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like.
 
 0.967
DvMF_0538
Cytochrome c class I; Natural electron acceptor for a formate dehydrogenase.
 
  
 
0.958
DvMF_0304
PFAM: Cache type 2 domain protein; KEGG: lch:Lcho_2364 cache type 2 domain protein.
     
  0.900
DvMF_0534
TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: dde:Dde_1825 Caa(3)-type oxidase, subunit IV.
 
 
 0.851
DvMF_0624
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase, putative.
   
 
 0.836
DvMF_1948
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: dde:Dde_0374 rhodanese-like protein.
   
 
 0.789
DvMF_2690
KEGG: dde:Dde_2932 hypothetical protein.
   
 
 0.766
DvMF_2266
KEGG: dde:Dde_0063 putative lipoprotein.
  
     0.716
DvMF_0537
Protein SCO1; KEGG: dde:Dde_1822 uncharacterized protein SCO1/SenC/PrrC.
 
   
 0.697
DvMF_2472
KEGG: dde:Dde_3205 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.
     
 0.685
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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