STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0549KEGG: dde:Dde_1811 hypothetical protein. (91 aa)    
Predicted Functional Partners:
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
   
    0.770
DvMF_0152
KEGG: dde:Dde_2169 hypothetical protein.
  
     0.695
DvMF_0429
PFAM: OstA family protein; KEGG: dde:Dde_1769 hypothetical protein.
  
     0.675
DvMF_0550
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dde:Dde_1810 succinyl-diaminopimelate desuccinylase.
 
     0.663
DvMF_0349
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
    0.659
DvMF_0919
KEGG: dde:Dde_2592 hypothetical protein.
  
     0.647
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
    0.636
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
    0.636
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
    0.636
rpmI
PFAM: ribosomal protein L35; KEGG: dde:Dde_2637 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
   
    0.632
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.