Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0570PFAM: polysaccharide deacetylase; KEGG: dde:Dde_1658 polysaccharide deacetylase family protein. (383 aa)    
Predicted Functional Partners:
DvMF_3016
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1402 glycosyl transferase, group 1 family protein.
 
  
 0.617
DvMF_2732
PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein.
  
     0.544
DvMF_3017
PFAM: glycosyl transferase group 1; KEGG: lip:LI0824 glycosyltransferase.
 
  
 0.516
DvMF_0846
KEGG: dde:Dde_3699 hypothetical protein.
  
     0.501
DvMF_2384
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein.
 
  
 0.486
DvMF_2733
PFAM: von Willebrand factor type A; KEGG: dde:Dde_2368 von Willebrand factor, type A.
  
     0.483
DvMF_0851
PFAM: Sporulation domain protein; KEGG: lip:LI0230 hypothetical protein.
  
    0.480
DvMF_3109
KEGG: dde:Dde_2420 dolichyl-phosphate-mannose-protein mannosyltransferase family protein.
 
  
 0.475
DvMF_0430
PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein.
  
     0.469
DvMF_1899
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_3686 NAD-dependent epimerase/dehydratase family protein.
 
  
 0.450
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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