STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0570PFAM: polysaccharide deacetylase; KEGG: dde:Dde_1658 polysaccharide deacetylase family protein. (383 aa)    
Predicted Functional Partners:
DvMF_0681
PFAM: glycosyl transferase family 2; KEGG: maq:Maqu_1655 glycosyl transferase family protein.
  
  
 0.627
DvMF_3016
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1402 glycosyl transferase, group 1 family protein.
 
  
 0.615
DvMF_2732
PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein.
  
     0.544
DvMF_0589
KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein.
  
  
 0.523
DvMF_2150
PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_3636 glycosyl transferase family protein.
  
  
 0.523
DvMF_3017
PFAM: glycosyl transferase group 1; KEGG: lip:LI0824 glycosyltransferase.
 
  
 0.514
DvMF_0846
KEGG: dde:Dde_3699 hypothetical protein.
  
     0.501
DvMF_3109
KEGG: dde:Dde_2420 dolichyl-phosphate-mannose-protein mannosyltransferase family protein.
 
  
 0.497
DvMF_2733
PFAM: von Willebrand factor type A; KEGG: dde:Dde_2368 von Willebrand factor, type A.
  
     0.483
DvMF_0851
PFAM: Sporulation domain protein; KEGG: lip:LI0230 hypothetical protein.
  
    0.477
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.