STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0573PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein. (461 aa)    
Predicted Functional Partners:
DvMF_3017
PFAM: glycosyl transferase group 1; KEGG: lip:LI0824 glycosyltransferase.
  
     0.731
DvMF_2384
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein.
  
     0.713
DvMF_0574
KEGG: dde:Dde_1654 hypothetical protein.
       0.618
DvMF_3035
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein.
 
  
 0.601
DvMF_0240
KEGG: dde:Dde_1702 hypothetical protein.
  
     0.595
DvMF_3016
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1402 glycosyl transferase, group 1 family protein.
  
     0.576
DvMF_3018
PFAM: O-antigen polymerase; KEGG: lip:LI0825 lipid A core-O-antigen ligase and related enzymes.
 
  
 0.561
DvMF_2946
KEGG: ade:Adeh_3213 hypothetical protein.
   
 
 0.559
DvMF_0282
Nucleotide sugar dehydrogenase; KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
 
  
 0.542
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.511
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.