Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_0580KEGG: dde:Dde_2617 hypothetical protein. (581 aa)    
Predicted Functional Partners:
DvMF_0579
KEGG: dde:Dde_2616 hypothetical protein.
       0.786
DvMF_0611
KEGG: dde:Dde_1634 hypothetical protein.
 
     0.750
DvMF_1387
PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein.
  
     0.744
DvMF_1550
KEGG: dde:Dde_0521 hypothetical protein.
  
     0.735
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.729
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.696
DvMF_1427
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2966 HD domain-containing protein.
  
     0.685
DvMF_1215
TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; Fe-S cluster domain protein; KEGG: dde:Dde_0719 molybdopterin-guanine dinucleotide biosynthesis protein-like.
  
     0.672
DvMF_2554
KEGG: dde:Dde_3710 acidic cytochrome c3.
  
     0.663
DvMF_2119
KEGG: dde:Dde_3774 hypothetical protein.
  
     0.656
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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