STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0588KEGG: dde:Dde_2624 hypothetical protein. (254 aa)    
Predicted Functional Partners:
DvMF_0589
KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein.
     0.985
DvMF_0587
KEGG: dde:Dde_2623 hypothetical protein.
       0.773
DvMF_0899
PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein.
 
     0.716
DvMF_1925
PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein.
     0.688
DvMF_0898
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: dde:Dde_1463 mercuric reductase, putative.
 
   
 0.587
DvMF_1788
PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein.
 
     0.569
DvMF_2691
KEGG: dde:Dde_2931 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein.
   
   0.496
DvMF_2327
TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase.
 
    0.485
DvMF_1206
KEGG: ana:alr2112 unknown protein.
  
     0.478
DvMF_1054
PFAM: protein of unknown function DUF1499; KEGG: syn:sll1620 hypothetical protein.
 
     0.475
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.