STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0593PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4835 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (445 aa)    
Predicted Functional Partners:
DvMF_0528
PFAM: protein of unknown function DUF111; KEGG: cbe:Cbei_0559 hypothetical protein; Belongs to the LarC family.
 
    0.674
DvMF_2713
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU2681 iron-sulfur cluster-binding protein.
 
  
 0.602
DvMF_0529
PFAM: aldo/keto reductase; KEGG: mbn:Mboo_0951 aldo/keto reductase.
 
    0.530
DvMF_1465
KEGG: dde:Dde_3008 hypothetical protein.
 
    0.514
DvMF_1604
KEGG: ote:Oter_0754 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
    0.468
DvMF_0527
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: wsu:WS0137 NCAIR mutase (PurE)-related protein.
 
     0.439
DvMF_0194
PFAM: protein of unknown function DUF161; KEGG: mba:Mbar_A3450 uncharacterized membrane protein.
  
     0.432
DvMF_1110
KEGG: dde:Dde_1149 hypothetical protein.
 
     0.431
DvMF_2097
PFAM: NADPH-dependent FMN reductase; KEGG: mba:Mbar_A2580 iron-sulfur flavoprotein.
 
     0.414
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.413
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.