STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0607PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_3727 acetyltransferase, GNAT family. (318 aa)    
Predicted Functional Partners:
DvMF_2145
PFAM: Protein of unknown function DUF1778; KEGG: neu:NE1104 hypothetical protein.
   
 
 0.643
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.496
DvMF_0608
Transcriptional regulator, NifA subfamily, Fis Family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: dde:Dde_1635 Fis family transcriptional regulator.
     
 0.485
DvMF_0609
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sfu:Sfum_4076 pyruvate ferredoxin/flavodoxin oxidoreductase.
       0.481
DvMF_0610
Indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.481
DvMF_0611
KEGG: dde:Dde_1634 hypothetical protein.
       0.481
DvMF_2913
PFAM: peptidase M22 glycoprotease; KEGG: dde:Dde_1121 glycoprotease family protein, putative.
  
 
 0.451
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.