STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0611KEGG: dde:Dde_1634 hypothetical protein. (231 aa)    
Predicted Functional Partners:
DvMF_0609
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sfu:Sfum_4076 pyruvate ferredoxin/flavodoxin oxidoreductase.
 
     0.833
DvMF_0610
Indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
     0.827
DvMF_0608
Transcriptional regulator, NifA subfamily, Fis Family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: dde:Dde_1635 Fis family transcriptional regulator.
     
 0.813
DvMF_2563
PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein.
  
     0.769
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
  
     0.769
DvMF_0479
KEGG: dde:Dde_2118 hypothetical protein.
  
     0.764
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.764
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.763
DvMF_0406
PFAM: Tetratricopeptide TPR_4; KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein.
  
     0.762
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.760
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.