Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0623TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0224 BadM/Rrf2 family transcriptional regulator. (189 aa)    
Predicted Functional Partners:
DvMF_0625
PFAM: protein of unknown function DUF1641; KEGG: dde:Dde_0222 hypothetical protein.
  
    0.883
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.848
DvMF_0624
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase, putative.
  
    0.773
DvMF_2659
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.703
DvMF_0626
PFAM: response regulator receiver; KEGG: dde:Dde_0221 response regulator receiver domain-containing protein.
 
  
 0.596
DvMF_2288
PFAM: flagellar motor switch protein FliG; KEGG: dde:Dde_0352 flagellar motor switch protein FliG.
   
   0.406
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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