STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0625PFAM: protein of unknown function DUF1641; KEGG: dde:Dde_0222 hypothetical protein. (233 aa)    
Predicted Functional Partners:
DvMF_0624
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase, putative.
 
    0.971
DvMF_0623
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0224 BadM/Rrf2 family transcriptional regulator.
  
    0.864
DvMF_1781
PFAM: glycosyl transferase family 8; KEGG: cre:CHLREDRAFT_186791 hypothetical protein Pfam: Cu-oxidase_3 DUF246 Glyco_transf_8.
  
    0.737
DvMF_0237
Putative CheA signal transduction histidine kinase; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Hpt domain protein; KEGG: dde:Dde_1700 CheA signal transduction histidine kinase.
  
     0.728
DvMF_1106
KEGG: dde:Dde_2556 phage uncharacterized protein-like.
  
     0.725
DvMF_1034
KEGG: dol:Dole_1414 hypothetical protein.
  
     0.687
DvMF_1161
PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
  
     0.666
DvMF_1948
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: dde:Dde_0374 rhodanese-like protein.
  
    0.665
DvMF_1327
KEGG: mma:MM_1125 hypothetical protein.
  
     0.662
DvMF_3051
PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein.
  
     0.648
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.