Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_0629PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_2406 protein of unknown function DUF214. (383 aa)    
Predicted Functional Partners:
DvMF_0630
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1162 ABC transporter, ATP-binding protein.
 0.984
DvMF_0631
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU1161 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.962
DvMF_0628
PFAM: protein of unknown function DUF214; KEGG: gsu:GSU1164 ABC transporter, permease protein.
 
   
 0.959
DvMF_2062
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_2109 ABC transporter related protein.
  
 0.774
DvMF_2955
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1339 ATPase.
  
 0.774
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
  
 
 0.769
DvMF_1629
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1809 ABC transporter, ATP-binding protein.
  
 0.768
DvMF_0697
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0826 ATPase.
  
 0.767
DvMF_1728
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1092 ABC transporter, ATP-binding protein.
  
 0.755
DvMF_2221
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0412 ATPase.
  
 0.755
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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