Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0630PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1162 ABC transporter, ATP-binding protein. (268 aa)    
Predicted Functional Partners:
DvMF_0628
PFAM: protein of unknown function DUF214; KEGG: gsu:GSU1164 ABC transporter, permease protein.
 
 0.990
DvMF_0629
PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_2406 protein of unknown function DUF214.
 0.984
DvMF_0631
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU1161 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.979
DvMF_2954
PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0268 ABC-type transport system, permease component.
 
 0.961
DvMF_2953
PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1335 ABC transporter, permease protein.
 
 0.941
DvMF_2063
PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_1553 protein of unknown function DUF214.
 
 0.892
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
  
 
 0.844
DvMF_2994
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1366 LolC/E family lipoprotein releasing system, transmembrane protein.
  
 0.844
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
  
 
 0.791
DvMF_0698
PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter, permease protein, putative.
  
 0.769
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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