Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0637PFAM: Radical SAM domain protein; KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB. (588 aa)    
Predicted Functional Partners:
DvMF_0638
KEGG: dps:DP0266 hypothetical protein.
 
     0.959
DvMF_0640
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gur:Gura_0999 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.958
DvMF_0635
PFAM: protein of unknown function DUF182; KEGG: pth:PTH_0686 xanthine and CO dehydrogenases maturation factor.
 
     0.935
DvMF_0634
PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gur:Gura_1006 metal dependent phosphohydrolase.
     0.931
DvMF_0636
KEGG: gme:Gmet_1800 coenzyme F390 synthetase-like.
 
     0.920
DvMF_0641
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: dde:Dde_3539 aldehyde dehydrogenase, molybdenum-binding subunit apoprotein.
 
     0.915
DvMF_0639
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_1001 methyltransferase type 11.
 
     0.907
DvMF_0633
PFAM: Phosphoglycerate mutase; KEGG: pca:Pcar_0229 fructose-2,6-bisphosphatase.
 
     0.719
DvMF_0642
Molybdopterin binding domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
     0.549
DvMF_2166
PFAM: protein of unknown function DUF169; KEGG: glo:Glov_1444 protein of unknown function DUF169.
  
     0.541
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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