Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
DvMF_0640PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gur:Gura_0999 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (902 aa)    
Predicted Functional Partners:
DvMF_2389
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 0.969
DvMF_0638
KEGG: dps:DP0266 hypothetical protein.
 
     0.959
DvMF_0637
PFAM: Radical SAM domain protein; KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB.
 
     0.958
DvMF_2388
Ferredoxin-dependent glutamate synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: sfu:Sfum_1724 ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family.
  
 0.950
DvMF_0639
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_1001 methyltransferase type 11.
 
  
 0.937
DvMF_0641
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: dde:Dde_3539 aldehyde dehydrogenase, molybdenum-binding subunit apoprotein.
 
   
 0.935
DvMF_0545
PFAM: glutamine amidotransferase class-II; KEGG: dde:Dde_1815 glutamate synthase (NADPH) GltB1 subunit.
  
 0.933
DvMF_2387
KEGG: sfu:Sfum_1725 glutamate synthase (NADPH).
  
 0.933
DvMF_0544
PFAM: glutamate synthase alpha subunit domain protein; KEGG: dde:Dde_1816 glutamate synthase (NADPH) GltB3 subunit.
  
 0.932
DvMF_0635
PFAM: protein of unknown function DUF182; KEGG: pth:PTH_0686 xanthine and CO dehydrogenases maturation factor.
 
     0.931
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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