Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_0653TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ypb:YPTS_3343 N-carbamoylputrescine amidase. (313 aa)    
Predicted Functional Partners:
DvMF_0652
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: hmo:HM1_2344 agmatine deiminase putative; Belongs to the agmatine deiminase family.
 
 0.996
DvMF_0654
PFAM: Amidohydrolase 3; KEGG: bpe:BP2617 hypothetical protein.
 
   
 0.826
DvMF_0739
KEGG: hsm:HSM_0675 hypothetical protein.
   
    0.641
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
     
 0.603
DvMF_1108
Endo-1,4-beta-xylanase-like protein; KEGG: lip:LI0197 similar to endo-1,4-beta-xylanase.
     
 0.603
DvMF_2557
KEGG: dde:Dde_3707 hypothetical protein.
     
 0.603
DvMF_0624
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase, putative.
   
  
 0.581
DvMF_1271
KEGG: dde:Dde_3358 hypothetical protein.
   
    0.543
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.533
DvMF_0836
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_2282 hydantoinase/oxoprolinase family protein.
    
 0.513
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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