Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0662Coenzyme F390 synthetase-like protein; KEGG: neu:NE0796 capsular polysaccharide biosynthesis protein CapK. (425 aa)    
Predicted Functional Partners:
DvMF_0636
KEGG: gme:Gmet_1800 coenzyme F390 synthetase-like.
 
     0.766
DvMF_0665
PFAM: protein of unknown function DUF201; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein.
 
     0.676
DvMF_0661
Integral membrane sensor signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0849 periplasmic sensor signal transduction histidine kinase.
 
   
 0.651
DvMF_0663
Uncharacterized protein involved in methicillin resistance-like protein; KEGG: rci:RCIX258 hypothetical protein.
       0.630
DvMF_0447
PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_2088 ACT domain-containing protein.
 
   0.615
DvMF_0664
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mxa:MXAN_2358 decarboxylase, pyridoxal-dependent.
  
    0.599
DvMF_0667
Hypothetical protein; KEGG: mlo:mlr0961 glycosyltransferase.
     
 0.599
DvMF_2322
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: emi:Emin_0772 iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.573
DvMF_0668
ATP-grasp protein-like protein; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein.
 
     0.568
DvMF_0666
KEGG: reh:H16_B0786 hypothetical protein.
       0.562
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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