STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0662Coenzyme F390 synthetase-like protein; KEGG: neu:NE0796 capsular polysaccharide biosynthesis protein CapK. (425 aa)    
Predicted Functional Partners:
DvMF_0636
KEGG: gme:Gmet_1800 coenzyme F390 synthetase-like.
 
     0.766
DvMF_0665
PFAM: protein of unknown function DUF201; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein.
 
     0.683
DvMF_0661
Integral membrane sensor signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0849 periplasmic sensor signal transduction histidine kinase.
 
   
 0.648
DvMF_0663
Uncharacterized protein involved in methicillin resistance-like protein; KEGG: rci:RCIX258 hypothetical protein.
       0.635
DvMF_2322
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: emi:Emin_0772 iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 
 0.612
DvMF_0667
Hypothetical protein; KEGG: mlo:mlr0961 glycosyltransferase.
     
 0.611
DvMF_0447
PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_2088 ACT domain-containing protein.
 
   0.602
DvMF_0664
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mxa:MXAN_2358 decarboxylase, pyridoxal-dependent.
  
    0.598
DvMF_0668
ATP-grasp protein-like protein; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein.
 
     0.577
DvMF_2146
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 
 0.564
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.