Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_0667Hypothetical protein; KEGG: mlo:mlr0961 glycosyltransferase. (336 aa)    
Predicted Functional Partners:
DvMF_0665
PFAM: protein of unknown function DUF201; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein.
       0.780
DvMF_0666
KEGG: reh:H16_B0786 hypothetical protein.
       0.773
DvMF_0663
Uncharacterized protein involved in methicillin resistance-like protein; KEGG: rci:RCIX258 hypothetical protein.
     
 0.740
DvMF_0664
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mxa:MXAN_2358 decarboxylase, pyridoxal-dependent.
       0.735
DvMF_0668
ATP-grasp protein-like protein; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein.
       0.618
DvMF_0669
KEGG: sus:Acid_4187 hypothetical protein.
  
    0.607
DvMF_0662
Coenzyme F390 synthetase-like protein; KEGG: neu:NE0796 capsular polysaccharide biosynthesis protein CapK.
     
 0.599
DvMF_0671
TIGRFAM: EpsI family protein; KEGG: dde:Dde_0848 hypothetical protein.
       0.461
DvMF_0672
TIGRFAM: eight transmembrane protein EpsH; PFAM: Eight transmembrane protein EpsH; KEGG: dde:Dde_0847 hypothetical protein.
       0.461
DvMF_0670
KEGG: dde:Dde_0850 two component Fis family transcriptional regulator; TIGRFAM: PEP-CTERM system response regulator; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
  
    0.458
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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