Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0668ATP-grasp protein-like protein; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein. (393 aa)    
Predicted Functional Partners:
DvMF_0669
KEGG: sus:Acid_4187 hypothetical protein.
 
     0.872
DvMF_0679
PFAM: O-antigen polymerase; KEGG: gbm:Gbem_1788 O-antigen polymerase.
 
     0.717
DvMF_0672
TIGRFAM: eight transmembrane protein EpsH; PFAM: Eight transmembrane protein EpsH; KEGG: dde:Dde_0847 hypothetical protein.
 
     0.682
DvMF_0678
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rru:Rru_A3093 membrane protein involved in the export of O-antigen and teichoic acid-like.
 
     0.665
DvMF_0665
PFAM: protein of unknown function DUF201; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein.
 
    
0.659
DvMF_0671
TIGRFAM: EpsI family protein; KEGG: dde:Dde_0848 hypothetical protein.
 
     0.654
DvMF_0663
Uncharacterized protein involved in methicillin resistance-like protein; KEGG: rci:RCIX258 hypothetical protein.
 
     0.650
DvMF_0667
Hypothetical protein; KEGG: mlo:mlr0961 glycosyltransferase.
       0.618
DvMF_0666
KEGG: reh:H16_B0786 hypothetical protein.
       0.611
DvMF_0673
PFAM: glycosyl transferase group 1; KEGG: scl:sce8918 glycosyltransferase.
 
     0.601
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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