STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0669KEGG: sus:Acid_4187 hypothetical protein. (780 aa)    
Predicted Functional Partners:
DvMF_0668
ATP-grasp protein-like protein; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein.
 
     0.872
DvMF_0678
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rru:Rru_A3093 membrane protein involved in the export of O-antigen and teichoic acid-like.
 
     0.795
DvMF_0665
PFAM: protein of unknown function DUF201; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein.
 
     0.754
DvMF_3012
Hypothetical protein; KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I.
 
     0.735
DvMF_0679
PFAM: O-antigen polymerase; KEGG: gbm:Gbem_1788 O-antigen polymerase.
 
     0.713
DvMF_2707
KEGG: cpc:Cpar_0784 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: CI repressor; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
     0.712
DvMF_0677
PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3263 putative glycosyltransferase.
 
     0.693
DvMF_0666
KEGG: reh:H16_B0786 hypothetical protein.
 
     0.681
DvMF_0671
TIGRFAM: EpsI family protein; KEGG: dde:Dde_0848 hypothetical protein.
 
     0.664
DvMF_0673
PFAM: glycosyl transferase group 1; KEGG: scl:sce8918 glycosyltransferase.
 
     0.650
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.