Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0682PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gur:Gura_2343 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (440 aa)    
Predicted Functional Partners:
DvMF_0681
PFAM: glycosyl transferase family 2; KEGG: maq:Maqu_1655 glycosyl transferase family protein.
 
   
 0.841
DvMF_0684
TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: ppd:Ppro_2470 polysaccharide deacetylase.
 
    0.822
DvMF_0678
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rru:Rru_A3093 membrane protein involved in the export of O-antigen and teichoic acid-like.
 
  
 0.816
DvMF_0683
TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: ppd:Ppro_2469 hypothetical protein.
 
     0.812
DvMF_0680
KEGG: swi:Swit_2495 hypothetical protein.
  
    0.778
DvMF_1911
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dde:Dde_3697 aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.773
DvMF_0675
Acetyltransferase (isoleucine patch superfamily)-like protein; KEGG: scl:sce6563 hypothetical protein.
 
  
 0.756
DvMF_0676
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0838 glycosyl transferase, group 1 family protein.
 
  
 0.737
DvMF_1831
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.
  
  
 0.728
DvMF_0690
TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: dde:Dde_0829 sugar transferase involved in lipopolysaccharide synthesis-like.
 
  
 0.721
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.