STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0699Putative two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_0820 two component Fis family transcriptional regulator. (489 aa)    
Predicted Functional Partners:
DvMF_0427
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.755
DvMF_0696
PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0825 hypothetical protein.
       0.634
DvMF_0697
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0826 ATPase.
       0.634
DvMF_0698
PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter, permease protein, putative.
       0.634
DvMF_0695
TIGRFAM: CAAX prenyl protease-related protein; PFAM: Abortive infection protein; KEGG: dde:Dde_0824 CAAX amino terminal protease family protein.
       0.591
DvMF_1396
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: dde:Dde_2708 flagellar motor switch protein FliM.
  
  
 0.468
DvMF_1089
KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.458
DvMF_0557
KEGG: dde:Dde_1800 flagellar synthesis regulator FleN, putative.
  
 
 0.432
DvMF_2012
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0382 flagellar synthesis regulator FleN.
  
 
 0.432
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
  
  
 0.406
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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