Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_0703PFAM: protein of unknown function DUF81; KEGG: pth:PTH_2261 predicted permease. (312 aa)    
Predicted Functional Partners:
DvMF_0704
KEGG: pth:PTH_2262 hypothetical protein.
 
     0.950
DvMF_2343
KEGG: sfu:Sfum_0627 lipoprotein, putative.
  
  
 0.710
DvMF_1711
PFAM: protein of unknown function DUF81; KEGG: sit:TM1040_3098 protein of unknown function DUF81.
  
     0.700
DvMF_0702
Hypothetical protein.
     
 0.681
DvMF_0707
PFAM: PEP-utilising protein mobile region; KEGG: sfu:Sfum_2666 pyruvate, water dikinase.
 
     0.639
DvMF_0701
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dol:Dole_2392 histidine kinase.
 
     0.617
DvMF_2345
KEGG: sfu:Sfum_0629 hypothetical protein.
  
  
 0.612
DvMF_0705
Pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0630 pyruvate, water dikinase.
 
     0.575
DvMF_0706
PFAM: response regulator receiver; KEGG: dol:Dole_2394 response regulator receiver protein.
 
     0.544
DvMF_2344
Hypothetical protein.
   
    0.520
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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