STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0714KEGG: aav:Aave_4120 bacteriophage DNA transposition B protein. (260 aa)    
Predicted Functional Partners:
DvMF_0713
PFAM: Transposase-like Mu; KEGG: bvi:Bcep1808_1328 MuA-transposase/repressor protein CI, DNA-binding.
 
 
 0.982
DvMF_0716
KEGG: bvi:Bcep1808_1324 regulatory protein, LacI.
 
     0.950
DvMF_1264
PFAM: Transposase-like Mu; KEGG: dde:Dde_3350 bacteriophage transposase A protein, putative.
 
 
 0.925
DvMF_0720
PFAM: protein of unknown function DUF1018; KEGG: ypy:YPK_0202 protein of unknown function DUF1018.
 
    0.906
DvMF_0721
PFAM: Mor transcription activator domain protein; KEGG: cvi:CV_0355 hypothetical protein.
 
     0.875
DvMF_1284
PFAM: protein of unknown function DUF935; KEGG: dde:Dde_3373 hypothetical protein.
 
  
 0.796
DvMF_0715
KEGG: pol:Bpro_3754 hypothetical protein.
       0.792
DvMF_0729
PFAM: protein of unknown function DUF935; KEGG: lip:LI0833 hypothetical protein NMA1314.
 
  
 0.791
DvMF_0735
KEGG: lip:LIC067 hypothetical protein.
 
  
 0.791
DvMF_1282
KEGG: dde:Dde_3372 portal protein, putative.
 
     0.789
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.