STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0715KEGG: pol:Bpro_3754 hypothetical protein. (197 aa)    
Predicted Functional Partners:
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
  
 
 0.875
DvMF_0117
PFAM: ABC-3 protein; KEGG: dde:Dde_2210 cation ABC transporter, permease protein.
  
 
 0.831
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
    
  0.827
DvMF_0716
KEGG: bvi:Bcep1808_1324 regulatory protein, LacI.
       0.806
DvMF_0714
KEGG: aav:Aave_4120 bacteriophage DNA transposition B protein.
       0.792
DvMF_0713
PFAM: Transposase-like Mu; KEGG: bvi:Bcep1808_1328 MuA-transposase/repressor protein CI, DNA-binding.
       0.788
DvMF_0717
Hypothetical protein.
       0.773
DvMF_0711
KEGG: dde:Dde_3347 hypothetical protein.
       0.762
DvMF_0712
KEGG: dde:Dde_3348 hypothetical protein.
       0.762
DvMF_0657
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transport system.
     
 0.723
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.