STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0716KEGG: bvi:Bcep1808_1324 regulatory protein, LacI. (109 aa)    
Predicted Functional Partners:
DvMF_0713
PFAM: Transposase-like Mu; KEGG: bvi:Bcep1808_1328 MuA-transposase/repressor protein CI, DNA-binding.
 
     0.949
DvMF_0714
KEGG: aav:Aave_4120 bacteriophage DNA transposition B protein.
 
     0.949
DvMF_0720
PFAM: protein of unknown function DUF1018; KEGG: ypy:YPK_0202 protein of unknown function DUF1018.
 
     0.901
DvMF_0721
PFAM: Mor transcription activator domain protein; KEGG: cvi:CV_0355 hypothetical protein.
 
     0.878
DvMF_0715
KEGG: pol:Bpro_3754 hypothetical protein.
       0.806
DvMF_0729
PFAM: protein of unknown function DUF935; KEGG: lip:LI0833 hypothetical protein NMA1314.
 
     0.776
DvMF_0730
TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: cvi:CV_2138 hypothetical protein.
 
     0.775
DvMF_0717
Hypothetical protein.
       0.773
DvMF_0737
PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein.
  
     0.772
DvMF_0734
KEGG: bvi:Bcep1808_1303 hypothetical protein.
  
     0.771
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.