STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0720PFAM: protein of unknown function DUF1018; KEGG: ypy:YPK_0202 protein of unknown function DUF1018. (146 aa)    
Predicted Functional Partners:
DvMF_0721
PFAM: Mor transcription activator domain protein; KEGG: cvi:CV_0355 hypothetical protein.
 
     0.948
DvMF_0714
KEGG: aav:Aave_4120 bacteriophage DNA transposition B protein.
 
    0.906
DvMF_0713
PFAM: Transposase-like Mu; KEGG: bvi:Bcep1808_1328 MuA-transposase/repressor protein CI, DNA-binding.
 
    0.901
DvMF_0716
KEGG: bvi:Bcep1808_1324 regulatory protein, LacI.
 
     0.900
DvMF_1265
KEGG: dde:Dde_3351 bacteriophage DNA transposition B protein, putative.
 
    0.802
DvMF_0737
PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein.
 
    0.798
DvMF_0727
PFAM: Protein of unknown function DUF1804; KEGG: ypy:YPK_0194 protein of unknown function DUF1804.
 
    0.796
DvMF_0729
PFAM: protein of unknown function DUF935; KEGG: lip:LI0833 hypothetical protein NMA1314.
 
    0.794
DvMF_0735
KEGG: lip:LIC067 hypothetical protein.
 
    0.793
DvMF_1282
KEGG: dde:Dde_3372 portal protein, putative.
 
    0.792
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.