Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0721PFAM: Mor transcription activator domain protein; KEGG: cvi:CV_0355 hypothetical protein. (156 aa)    
Predicted Functional Partners:
DvMF_0720
PFAM: protein of unknown function DUF1018; KEGG: ypy:YPK_0202 protein of unknown function DUF1018.
 
     0.949
DvMF_0713
PFAM: Transposase-like Mu; KEGG: bvi:Bcep1808_1328 MuA-transposase/repressor protein CI, DNA-binding.
 
     0.888
DvMF_0716
KEGG: bvi:Bcep1808_1324 regulatory protein, LacI.
 
     0.878
DvMF_0714
KEGG: aav:Aave_4120 bacteriophage DNA transposition B protein.
 
     0.876
DvMF_0727
PFAM: Protein of unknown function DUF1804; KEGG: ypy:YPK_0194 protein of unknown function DUF1804.
 
     0.783
DvMF_0729
PFAM: protein of unknown function DUF935; KEGG: lip:LI0833 hypothetical protein NMA1314.
 
     0.780
DvMF_0718
KEGG: dde:Dde_3357 hypothetical protein.
       0.773
DvMF_0719
Hypothetical protein.
       0.773
DvMF_0748
KEGG: bbr:BB3613 hypothetical protein.
  
     0.773
DvMF_0745
KEGG: bbr:BB3615 putative phage tail protein.
  
     0.770
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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