STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0723PFAM: Lytic transglycosylase catalytic; KEGG: lip:LIC036 putative lytic murein transglycosylase precursor. (262 aa)    
Predicted Functional Partners:
DvMF_0729
PFAM: protein of unknown function DUF935; KEGG: lip:LI0833 hypothetical protein NMA1314.
 
     0.857
DvMF_0728
TIGRFAM: phage uncharacterized protein; KEGG: nma:NMA1852 hypothetical protein.
 
     0.801
DvMF_0722
KEGG: lip:LIC084 phage-related membrane protein.
  
    0.800
DvMF_0724
KEGG: eca:ECA2778 hypothetical protein.
       0.786
DvMF_0727
PFAM: Protein of unknown function DUF1804; KEGG: ypy:YPK_0194 protein of unknown function DUF1804.
 
     0.779
DvMF_0725
Hypothetical protein.
       0.773
DvMF_0726
KEGG: ypy:YPK_0195 hypothetical protein.
       0.741
DvMF_0730
TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: cvi:CV_2138 hypothetical protein.
 
     0.647
DvMF_2732
PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein.
  
     0.596
DvMF_0734
KEGG: bvi:Bcep1808_1303 hypothetical protein.
 
     0.581
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.