STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0739KEGG: hsm:HSM_0675 hypothetical protein. (67 aa)    
Predicted Functional Partners:
DvMF_0735
KEGG: lip:LIC067 hypothetical protein.
  
  
 0.922
DvMF_0738
PFAM: Domain of unknown function DUF1834; KEGG: lip:LIC069 hypothetical protein.
  
  
 0.827
DvMF_0737
PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein.
  
  
 0.826
DvMF_0740
PFAM: Mu tail sheath family protein; KEGG: bbr:BB3621 putative phage tail sheath protein.
  
  
 0.818
DvMF_0734
KEGG: bvi:Bcep1808_1303 hypothetical protein.
  
  
 0.798
DvMF_0736
Hypothetical protein; KEGG: cel:ZK84.1 ZK84.1.
       0.773
DvMF_0732
KEGG: slo:Shew_2180 hypothetical protein.
       0.634
DvMF_0733
KEGG: slo:Shew_2179 hypothetical protein.
       0.634
DvMF_0653
TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ypb:YPTS_3343 N-carbamoylputrescine amidase.
   
    0.630
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
    0.594
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.