Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0740PFAM: Mu tail sheath family protein; KEGG: bbr:BB3621 putative phage tail sheath protein. (473 aa)    
Predicted Functional Partners:
DvMF_0734
KEGG: bvi:Bcep1808_1303 hypothetical protein.
 
   
 0.952
DvMF_0737
PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein.
 
   
 0.951
DvMF_0735
KEGG: lip:LIC067 hypothetical protein.
 
  
 0.947
DvMF_0744
PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein.
 
    0.857
DvMF_0745
KEGG: bbr:BB3615 putative phage tail protein.
 
    0.857
DvMF_0743
KEGG: bbr:BB3617 hypothetical protein.
 
   
 0.856
DvMF_0746
TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; KEGG: cvi:CV_0345 bacteriophage base plate protein.
 
  
 0.845
DvMF_0731
TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis (putative tail completion) protein; KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein.
 
     0.837
DvMF_0730
TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: cvi:CV_2138 hypothetical protein.
 
     0.833
DvMF_0739
KEGG: hsm:HSM_0675 hypothetical protein.
  
  
 0.832
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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