Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0741KEGG: bbr:BB3620 hypothetical protein. (124 aa)    
Predicted Functional Partners:
DvMF_0742
Conserved hypothetical protein; KEGG: lip:LIC072 NA.
       0.806
DvMF_0740
PFAM: Mu tail sheath family protein; KEGG: bbr:BB3621 putative phage tail sheath protein.
  
    0.560
DvMF_0744
PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein.
  
    0.542
DvMF_0738
PFAM: Domain of unknown function DUF1834; KEGG: lip:LIC069 hypothetical protein.
       0.530
DvMF_0737
PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein.
       0.529
DvMF_0739
KEGG: hsm:HSM_0675 hypothetical protein.
       0.527
DvMF_0735
KEGG: lip:LIC067 hypothetical protein.
       0.521
DvMF_0743
KEGG: bbr:BB3617 hypothetical protein.
  
    0.520
DvMF_0734
KEGG: bvi:Bcep1808_1303 hypothetical protein.
       0.518
DvMF_0745
KEGG: bbr:BB3615 putative phage tail protein.
       0.509
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.