STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0748KEGG: bbr:BB3613 hypothetical protein. (123 aa)    
Predicted Functional Partners:
DvMF_0749
PFAM: Baseplate J family protein; KEGG: bbr:BB3612 putative phage tail protein.
 
    0.955
DvMF_0750
KEGG: lip:LIC089 hypothetical protein.
 
    0.955
DvMF_0751
KEGG: lip:LIC026 hypothetical protein.
 
    0.862
DvMF_0746
TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; KEGG: cvi:CV_0345 bacteriophage base plate protein.
 
    0.857
DvMF_0744
PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein.
 
    0.836
DvMF_0745
KEGG: bbr:BB3615 putative phage tail protein.
 
    0.822
DvMF_0740
PFAM: Mu tail sheath family protein; KEGG: bbr:BB3621 putative phage tail sheath protein.
 
    0.816
DvMF_0734
KEGG: bvi:Bcep1808_1303 hypothetical protein.
 
    0.802
DvMF_0737
PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein.
 
     0.791
DvMF_0743
KEGG: bbr:BB3617 hypothetical protein.
 
     0.791
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.