STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0758PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1595 hypothetical protein. (250 aa)    
Predicted Functional Partners:
DvMF_1066
KEGG: dde:Dde_2546 hypothetical protein.
  
     0.598
DvMF_1065
KEGG: dde:Dde_2545 hypothetical protein.
  
     0.581
DvMF_1788
PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein.
  
     0.557
DvMF_2347
KEGG: dde:Dde_0307 hypothetical protein.
 
     0.536
DvMF_0589
KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein.
 
     0.474
DvMF_0588
KEGG: dde:Dde_2624 hypothetical protein.
 
     0.436
DvMF_0587
KEGG: dde:Dde_2623 hypothetical protein.
  
     0.420
DvMF_0757
KEGG: cre:CHLREDRAFT_149841 hypothetical protein Pfam: Extensin_2 PROSITE: ALA_RICH GLN_RICH HIS_RICH PRO_RICH.
       0.407
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.