Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_0758PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1595 hypothetical protein. (250 aa)    
Predicted Functional Partners:
DvMF_1066
KEGG: dde:Dde_2546 hypothetical protein.
  
     0.598
DvMF_1065
KEGG: dde:Dde_2545 hypothetical protein.
  
     0.581
DvMF_1788
PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein.
  
     0.557
DvMF_2079
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: dde:Dde_0236 hypothetical protein.
     
  0.554
DvMF_2347
KEGG: dde:Dde_0307 hypothetical protein.
 
     0.536
DvMF_0566
Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.533
DvMF_2078
Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.533
DvMF_0589
KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein.
 
     0.473
DvMF_0588
KEGG: dde:Dde_2624 hypothetical protein.
 
     0.438
DvMF_0587
KEGG: dde:Dde_2623 hypothetical protein.
  
     0.420
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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