STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0765KEGG: dde:Dde_1587 hypothetical protein. (1100 aa)    
Predicted Functional Partners:
DvMF_0764
PFAM: UvrD/REP helicase; KEGG: dde:Dde_1588 ATP-dependent DNA helicase UvrD.
 
   
 0.967
DvMF_2676
Putative phage repressor; PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dde:Dde_2949 DNA-binding protein, putative.
 
     0.753
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
 
     0.736
DvMF_0430
PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein.
  
     0.707
DvMF_1399
PFAM: Ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein.
  
     0.705
DvMF_0406
PFAM: Tetratricopeptide TPR_4; KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein.
  
     0.668
DvMF_0178
PFAM: outer membrane chaperone Skp (OmpH); KEGG: dde:Dde_1787 putative lipoprotein.
  
     0.655
DvMF_1967
PFAM: UvrD/REP helicase; KEGG: dde:Dde_3571 ATP-dependent DNA helicase UvrD.
 
 
   0.646
DvMF_0766
PFAM: 2-nitropropane dioxygenase NPD; KEGG: lip:LI1075 dioxygenases related to 2-nitropropane dioxygenase.
 
     0.632
DvMF_2822
KEGG: dde:Dde_0994 hypothetical protein.
  
     0.632
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.