Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0769TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; KEGG: dde:Dde_1583 putative signal transduction protein. (279 aa)    
Predicted Functional Partners:
DvMF_0770
KEGG: dde:Dde_1582 hypothetical protein.
 
     0.906
DvMF_0768
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase.
 
     0.763
DvMF_0771
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA, putative.
       0.700
cpoB-2
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
       0.582
DvMF_1366
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2680 diguanylate cyclase.
 
      0.581
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.544
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.523
DvMF_2524
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3152 flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
 
    0.498
DvMF_0247
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
 
    0.489
xerC-2
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.468
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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