STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0770KEGG: dde:Dde_1582 hypothetical protein. (164 aa)    
Predicted Functional Partners:
DvMF_0769
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; KEGG: dde:Dde_1583 putative signal transduction protein.
 
     0.898
DvMF_0922
Conserved hypothetical protein; KEGG: glo:Glov_3362 glycosyl transferase family 2.
  
     0.752
DvMF_2326
KEGG: dde:Dde_1667 TPR repeat-containing protein.
  
     0.744
DvMF_0768
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase.
 
     0.721
DvMF_0508
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1835 glycosyl transferase, group 1 family protein.
  
     0.710
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
  
     0.697
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
  
     0.680
DvMF_2229
KEGG: dde:Dde_0075 hypothetical protein.
  
     0.666
DvMF_0206
KEGG: dde:Dde_1679 hypothetical protein.
  
     0.645
DvMF_0771
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA, putative.
       0.639
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.