STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0777PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_1574 ParA family protein. (257 aa)    
Predicted Functional Partners:
DvMF_2045
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dde:Dde_0029 chromosome segregation DNA-binding protein; Belongs to the ParB family.
 
 
 0.960
DvMF_0776
PFAM: CheW domain protein; KEGG: dde:Dde_1575 CheW protein.
  
 
 0.842
DvMF_0775
PFAM: response regulator receiver; KEGG: dde:Dde_1576 response regulator receiver domain-containing protein.
  
  
 0.829
DvMF_2726
SMART: ParB domain protein nuclease; KEGG: azc:AZC_1530 hypothetical protein.
  
 
 0.797
DvMF_0589
KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein.
  
 
 0.640
DvMF_0681
PFAM: glycosyl transferase family 2; KEGG: maq:Maqu_1655 glycosyl transferase family protein.
  
 
 0.640
DvMF_2150
PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_3636 glycosyl transferase family protein.
  
 
 0.640
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.628
DvMF_0371
PFAM: cell divisionFtsK/SpoIIIE; KEGG: dde:Dde_1955 FtsK/SpoIIIE family protein.
  
  
 0.622
DvMF_2081
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
 
 
 
 0.618
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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