STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0802PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0164 ABC transporter related. (434 aa)    
Predicted Functional Partners:
DvMF_0803
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4593 binding-protein-dependent transport systems inner membrane component.
 
   
 0.976
DvMF_0521
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1108 binding-protein-dependent transport systems inner membrane component.
  
 0.897
DvMF_0520
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpt:Rpal_4641 binding-protein-dependent transport systems inner membrane component.
  
 0.896
DvMF_0167
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gbm:Gbem_1735 twin-arginine translocation pathway signal; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.761
DvMF_0519
KEGG: vei:Veis_0768 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein.
 
  
 0.735
gatA
glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
     
 0.409
DvMF_0804
PFAM: UspA domain protein; KEGG: sfu:Sfum_0624 UspA domain protein.
     
 0.402
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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