Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
DvMF_0802PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0164 ABC transporter related. (434 aa)    
Predicted Functional Partners:
DvMF_0803
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4593 binding-protein-dependent transport systems inner membrane component.
 
   
 0.974
DvMF_0521
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1108 binding-protein-dependent transport systems inner membrane component.
 
 0.951
DvMF_0520
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpt:Rpal_4641 binding-protein-dependent transport systems inner membrane component.
 
 0.950
DvMF_0519
KEGG: vei:Veis_0768 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein.
 
 0.886
DvMF_0167
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gbm:Gbem_1735 twin-arginine translocation pathway signal; Belongs to the sigma-70 factor family. ECF subfamily.
  
 0.866
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
  
 
 0.840
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
  
  
  0.789
DvMF_0656
PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 probable extracellular solute-binding protein.
    
 0.693
DvMF_2488
TIGRFAM: phosphate binding protein; KEGG: lip:LI1028 phosphate-binding protein.
     
 0.688
DvMF_2565
KEGG: cch:Cag_0501 periplasmic phosphate binding protein.
     
 0.688
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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