Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0812Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: dde:Dde_0407 transcriptional regulator, putative. (320 aa)    
Predicted Functional Partners:
DvMF_0811
PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_0408 glycerol-3-phosphate dehydrogenase, FAD-dependent; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
     
 0.794
DvMF_2582
KEGG: dde:Dde_1178 dihydroxyacetone kinase subunit DhaK; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase.
     0.741
DvMF_0810
PFAM: major intrinsic protein; KEGG: dde:Dde_0409 glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.476
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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