Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_0815KEGG: dde:Dde_1543 hypothetical protein. (216 aa)    
Predicted Functional Partners:
DvMF_0816
PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: dde:Dde_1542 acetyl-CoA carboxylase.
 
 0.999
DvMF_0817
Biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: dde:Dde_1541 pyruvate carboxylase.
 
 0.994
DvMF_0814
KEGG: dde:Dde_1544 hypothetical protein.
       0.828
DvMF_2275
SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_0365 metal dependent phosphohydrolase.
 
     0.758
DvMF_2636
KEGG: dde:Dde_3117 hypothetical protein.
  
     0.738
DvMF_3121
KEGG: dde:Dde_1466 putative lipoprotein.
  
     0.682
DvMF_0849
PFAM: Acyl transferase; KEGG: dde:Dde_2294 [acyl-carrier-protein] S-malonyltransferase.
  
  
 0.665
DvMF_2667
KEGG: dde:Dde_2939 hypothetical protein.
  
     0.651
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.642
DvMF_1159
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD.
  
  
  0.635
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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